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Table 5: SEMs and LoAs derived from variance component analysis out of a linear multilevel model for each deep GM structure
GM Structure Software SEM Longitudinal Volume Change, μl LoA, μl SEM % Longitudinal Volume Change LoA, %
Caudate nucleus FreeSurfer 112.89 312.92 2.90 8.05
FIRST 125.83 348.79 3.76 10.42
Putamen FreeSurfer 150.64 417.54 2.98 8.27
FIRST 181.05 501.85 3.86 10.69
Amygdala FreeSurfer 78.14 216.59 7.05 19.54
FIRST 146.23 405.33 7.86 21.77
Globus pallidus FreeSurfer 80.33 222.67 5.30 14.69
FIRST 74.22 205.74 4.64 12.87
Thalamus FreeSurfer 128.02 354.86 1.87 5.17
FIRST 142.53 395.07 1.96 5.43

GM Structure	Software	SEM Longitudinal Volume Change, μl	LoA, μl	SEM % Longitudinal Volume Change	LoA, %
Caudate nucleus	FreeSurfer	112.89	312.92	2.90	8.05
Caudate nucleus	FIRST	125.83	348.79	3.76	10.42
Putamen	FreeSurfer	150.64	417.54	2.98	8.27
Putamen	FIRST	181.05	501.85	3.86	10.69
Amygdala	FreeSurfer	78.14	216.59	7.05	19.54
Amygdala	FIRST	146.23	405.33	7.86	21.77
Globus pallidus	FreeSurfer	80.33	222.67	5.30	14.69
Globus pallidus	FIRST	74.22	205.74	4.64	12.87
Thalamus	FreeSurfer	128.02	354.86	1.87	5.17
Thalamus	FIRST	142.53	395.07	1.96	5.43