Functional Connectivity during Resting-State Functional MR Imaging: Study of the Correspondence between Independent Component Analysis and Region-of-Interest−Based Methods

C. Rosazza; L. Minati; F. Ghielmetti; M.L. Mandelli; M.G. Bruzzone

doi:10.3174/ajnr.A2733

References

1.↵
1. Friston KJ,
2. Frith CD,
3. Liddle PF,
4. et al
. Functional connectivity: the principal-component analysis of large (PET) data sets. J Cereb Blood Flow Metab 1993;13:5–14
CrossRef PubMed Web of Science
2.↵
1. Friston KJ,
2. Frith CD,
3. Fletcher P,
4. et al
. Functional topography: multidimensional scaling and functional connectivity in the brain. Cereb Cortex 1996;6:156–64
Abstract/FREE Full Text
3.↵
1. Biswal B,
2. Yetkin FZ,
3. Haughton VM,
4. et al
. Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magn Reson Med 1995;34:537–41
CrossRef PubMed Web of Science
4.↵
1. Fox MD,
2. Raichle ME
. Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging. Nat Rev Neurosci 2007;8:700–11
CrossRef PubMed Web of Science
5.↵
1. Raichle ME,
2. Mintun MA
. Brain work and brain imaging. Annu Rev Neurosci 2006;29:449–76
CrossRef PubMed Web of Science
6.↵
1. Raichle ME
. Two views of brain functions. Trends Cogn Sci 2010;14:180–90
CrossRef PubMed Web of Science
7.↵
1. He BJ,
2. Snyder AZ,
3. Zempel JM,
4. et al
. Electrophysiological correlates of the brain's intrinsic large-scale functional architecture. Proc Natl Acad Sci U S A 2008;105:16039–44
Abstract/FREE Full Text
8.↵
1. Logothetis NK,
2. Pauls J,
3. Augath M,
4. et al
. Neurophysiological investigation of the basis of the fMRI signal. Nature 2001;412:150–57
CrossRef PubMed Web of Science
9.↵
1. Birn RM,
2. Murphy K,
3. Bandettini PA
. The effect of respiration variations on independent component analysis results of resting-state functional connectivity. Hum Brain Mapp 2008;29:740–50
CrossRef PubMed Web of Science
10.↵
1. Li SJ,
2. Li Z,
3. Wu G,
4. et al
. Alzheimer disease: evaluation of a functional MR imaging index as a marker. Radiology 2002;225:253–59
CrossRef PubMed Web of Science
11.↵
1. Greicius MD,
2. Srivastava G,
3. Reiss AL,
4. et al
. Default-mode network activity distinguishes Alzheimer's disease from healthy aging: evidence from functional MRI. Proc Natl Acad Sci U S A 2004;101:4637–42
Abstract/FREE Full Text
12.↵
1. McKeown MJ,
2. Makeig S,
3. Brown GG,
4. et al
. Analysis of fMRI data by blind separation into independent spatial components. Hum Brain Mapp 1998;6:160–88
CrossRef PubMed Web of Science
13.↵
1. Beckmann CF,
2. DeLuca M,
3. Devlin JT,
4. et al
. Investigations into resting-state connectivity using independent component analysis. Philos Trans R Soc Lond B Biol Sci 2005;360:1001–13
Abstract/FREE Full Text
14.↵
1. Damoiseaux JS,
2. Rombouts SA,
3. Barkhof F,
4. et al
. . Consistent resting-state networks across healthy subjects. Proc Natl Acad Sci U S A 2006;103:13848–53
Abstract/FREE Full Text
15.↵
1. McKeown MJ,
2. Jung TP,
3. Makeig S,
4. et al
. Spatially independent activity patterns in functional MRI data during the stroop color-naming task. Proc Natl Acad Sci U S A 1998;95:803–10
Abstract/FREE Full Text
16.↵
1. Wang J,
2. Wang L,
3. Zang Y,
4. et al
. Parcellation-dependent small-world brain functional networks: a resting-state fMRI study. Hum Brain Mapp 2009;30:1511–23
CrossRef PubMed Web of Science
17.↵
1. Cordes D,
2. Haughton VM,
3. Arfanakis K,
4. et al
. Mapping functionally related regions of brain with functional connectivity MR imaging. AJNR Am J Neuroradiol 2000;21:1636–44
Abstract/FREE Full Text
18.↵
1. Remes JJ,
2. Starck T.,
3. Nikkinen J,
4. et al
. Effects of repeatability measures on results of fMRI sICA: a study on simulated and real resting-state effects. Neuroimage 2010;56:554–69. Epub 2010 May 6
PubMed
19.↵
1. Seeley WW,
2. Menon V,
3. Schatzberg AF,
4. et al
. Dissociable intrinsic connectivity networks for salience processing and executive control. J Neurosci 2007;27:2349–56
Abstract/FREE Full Text
20.↵
1. Bluhm RL,
2. Osuch EA,
3. Lanius RA,
4. et al
. Default mode network connectivity: effects of age, sex, and analytic approach. Neuroreport 2008;19:887–91
CrossRef PubMed Web of Science
21.↵
1. Long XY,
2. Zuo XN,
3. Kiviniemi V,
4. et al
. Default mode network as revealed with multiple methods for resting-state functional MRI analysis. J Neurosci Methods 2008;171:349–55
CrossRef PubMed Web of Science
22.↵
1. Ma L,
2. Wang B,
3. Chen X,
4. et al
. Detecting functional connectivity in the resting brain: a comparison between ICA and CCA. Magn Reson Imaging 2008;25:47–56
23.↵
1. Uddin LQ,
2. Kelly AM,
3. Biswal BB,
4. et al
. Functional connectivity of default mode network components: correlation, anticorrelation, and causality. Hum Brain Mapp 2009;30:625–37
CrossRef PubMed Web of Science
24.↵
1. Van Dijk KR,
2. Hedden T,
3. Venkataraman A,
4. et al
. Intrinsic functional connectivity as a tool for human connectomics: theory, properties, and optimization. J Neurophysiol 2010;103:297–321. Epub 2009 Nov 4
Abstract/FREE Full Text
25.↵
1. Calhoun VD,
2. Kiehl KA,
3. Pearlson G.D.
. Modulation of temporally coherent brain networks estimated using ICA at rest and during cognitive tasks. Hum Brain Mapp 2008;29:828–38
CrossRef PubMed Web of Science
26.↵
1. Calhoun VD,
2. Adali T,
3. Pearlson GD,
4. et al
. A method for making group inferences from functional MRI data using independent component analysis. Hum Brain Mapp 2001;14:140–51
CrossRef PubMed Web of Science
27.↵
1. Rissanen J
. Modeling by the shortest data description. Automatica 1978;14:465–71
CrossRef Web of Science
28.↵
1. Rosazza C.,
2. Minati L
. Resting state brain networks: literature review and clinical applications. Neurol Sci 2011 Jun 11. [Epub ahead of print]
29.↵
1. Tzourio-Mazoyer N,
2. Landeau B,
3. Papathanassiou D,
4. et al
. Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. Neuroimage 2002;15:273–89
CrossRef PubMed Web of Science
30.↵
1. Weissenbacher A,
2. Kasess C,
3. Gerstl F,
4. et al
. Correlations and anticorrelations in resting-state functional connectivity MRI: a quantitative comparison of preprocessing strategies. Neuroimage 2009;47:1408–16
CrossRef PubMed Web of Science
31.↵
1. Cohen J
. Statistical Power Analysis for the Behavioral Sciences. 2nd ed., Hillsdale, New Jersey: Lawrence Erlbaum Associates; 1988
32.↵
1. Bullmore E,
2. Sporns O
. Complex brain networks: graph theoretical analysis of structural and functional systems. Nat Rev Neurosci 2009;10:186–98. Epub 2009 Feb 4
CrossRef PubMed Web of Science
33.↵
1. Soldati N,
2. Robinson S,
3. Bruzzone L,
4. et al
. Automatic identification of human brain resting-state networks: reliability of classification over number of independent components identified. In: Proceedings of the 15th Annual Meeting of the Organization for Human Brain Mapping, San Francisco, California. June 18–23, 2009
34.↵
1. Abou-Elseoud A,
2. Starck T,
3. Remes J,
4. et al
. The effect of model order selection in group PICA. Hum Brain Mapp 2010;31:1207–16
PubMed Web of Science
35.↵
1. Fox MD,
2. Snyder AZ,
3. Vincent JL,
4. et al
. The human brain is intrinsically organized into dynamic, anticorrelated functional networks. Proc Natl Acad Sci U S A 2005;102:9673–78
Abstract/FREE Full Text
36.↵
1. De Luca M,
2. Beckmann CF,
3. De Stefano N,
4. et al
. fMRI resting-state networks define distinct modes of long-distance interactions in the human brain. Neuroimage 2006;29:1359–67
CrossRef PubMed Web of Science
37.↵
1. Zhang D,
2. Johnston JM,
3. Fox MD,
4. et al
. Preoperative sensorimotor mapping in brain tumor patients using spontaneous fluctuations in neuronal activity imaged with functional magnetic resonance imaging: initial experience. Neurosurgery 2009;65:226–36
PubMed Web of Science

In this issue

Download PDF

Email Article

Citation Tools

Purchase

Cited By...

More in this TOC Section

Show more FUNCTIONAL

[1] 1.↵
Friston KJ,
Frith CD,
Liddle PF,
et al
. Functional connectivity: the principal-component analysis of large (PET) data sets. J Cereb Blood Flow Metab 1993;13:5–14
CrossRef PubMed Web of Science

[2] Friston KJ,

[3] Frith CD,

[4] Liddle PF,

[5] et al

[6] 2.↵
Friston KJ,
Frith CD,
Fletcher P,
et al
. Functional topography: multidimensional scaling and functional connectivity in the brain. Cereb Cortex 1996;6:156–64
Abstract/FREE Full Text

[7] Friston KJ,

[8] Frith CD,

[9] Fletcher P,

[10] et al

[11] 3.↵
Biswal B,
Yetkin FZ,
Haughton VM,
et al
. Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magn Reson Med 1995;34:537–41
CrossRef PubMed Web of Science

[12] Biswal B,

[13] Yetkin FZ,

[14] Haughton VM,

[15] et al

[16] 4.↵
Fox MD,
Raichle ME
. Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging. Nat Rev Neurosci 2007;8:700–11
CrossRef PubMed Web of Science

[17] Fox MD,

[18] Raichle ME

[19] 5.↵
Raichle ME,
Mintun MA
. Brain work and brain imaging. Annu Rev Neurosci 2006;29:449–76
CrossRef PubMed Web of Science

[20] Raichle ME,

[21] Mintun MA

[22] 6.↵
Raichle ME
. Two views of brain functions. Trends Cogn Sci 2010;14:180–90
CrossRef PubMed Web of Science

[23] Raichle ME

[24] 7.↵
He BJ,
Snyder AZ,
Zempel JM,
et al
. Electrophysiological correlates of the brain's intrinsic large-scale functional architecture. Proc Natl Acad Sci U S A 2008;105:16039–44
Abstract/FREE Full Text

[25] He BJ,

[26] Snyder AZ,

[27] Zempel JM,

[28] et al

[29] 8.↵
Logothetis NK,
Pauls J,
Augath M,
et al
. Neurophysiological investigation of the basis of the fMRI signal. Nature 2001;412:150–57
CrossRef PubMed Web of Science

[30] Logothetis NK,

[31] Pauls J,

[32] Augath M,

[33] et al

[34] 9.↵
Birn RM,
Murphy K,
Bandettini PA
. The effect of respiration variations on independent component analysis results of resting-state functional connectivity. Hum Brain Mapp 2008;29:740–50
CrossRef PubMed Web of Science

[35] Birn RM,

[36] Murphy K,

[37] Bandettini PA

[38] 10.↵
Li SJ,
Li Z,
Wu G,
et al
. Alzheimer disease: evaluation of a functional MR imaging index as a marker. Radiology 2002;225:253–59
CrossRef PubMed Web of Science

[39] Li SJ,

[40] Li Z,

[41] Wu G,

[42] et al

[43] 11.↵
Greicius MD,
Srivastava G,
Reiss AL,
et al
. Default-mode network activity distinguishes Alzheimer's disease from healthy aging: evidence from functional MRI. Proc Natl Acad Sci U S A 2004;101:4637–42
Abstract/FREE Full Text

[44] Greicius MD,

[45] Srivastava G,

[46] Reiss AL,

[47] et al

[48] 12.↵
McKeown MJ,
Makeig S,
Brown GG,
et al
. Analysis of fMRI data by blind separation into independent spatial components. Hum Brain Mapp 1998;6:160–88
CrossRef PubMed Web of Science

[49] McKeown MJ,

[50] Makeig S,

[51] Brown GG,

[52] et al

[53] 13.↵
Beckmann CF,
DeLuca M,
Devlin JT,
et al
. Investigations into resting-state connectivity using independent component analysis. Philos Trans R Soc Lond B Biol Sci 2005;360:1001–13
Abstract/FREE Full Text

[54] Beckmann CF,

[55] DeLuca M,

[56] Devlin JT,

[57] et al

[58] 14.↵
Damoiseaux JS,
Rombouts SA,
Barkhof F,
et al
. . Consistent resting-state networks across healthy subjects. Proc Natl Acad Sci U S A 2006;103:13848–53
Abstract/FREE Full Text

[59] Damoiseaux JS,

[60] Rombouts SA,

[61] Barkhof F,

[62] et al

[63] 15.↵
McKeown MJ,
Jung TP,
Makeig S,
et al
. Spatially independent activity patterns in functional MRI data during the stroop color-naming task. Proc Natl Acad Sci U S A 1998;95:803–10
Abstract/FREE Full Text

[64] McKeown MJ,

[65] Jung TP,

[66] Makeig S,

[67] et al

[68] 16.↵
Wang J,
Wang L,
Zang Y,
et al
. Parcellation-dependent small-world brain functional networks: a resting-state fMRI study. Hum Brain Mapp 2009;30:1511–23
CrossRef PubMed Web of Science

[69] Wang J,

[70] Wang L,

[71] Zang Y,

[72] et al

[73] 17.↵
Cordes D,
Haughton VM,
Arfanakis K,
et al
. Mapping functionally related regions of brain with functional connectivity MR imaging. AJNR Am J Neuroradiol 2000;21:1636–44
Abstract/FREE Full Text

[74] Cordes D,

[75] Haughton VM,

[76] Arfanakis K,

[77] et al

[78] 18.↵
Remes JJ,
Starck T.,
Nikkinen J,
et al
. Effects of repeatability measures on results of fMRI sICA: a study on simulated and real resting-state effects. Neuroimage 2010;56:554–69. Epub 2010 May 6
PubMed

[79] Remes JJ,

[80] Starck T.,

[81] Nikkinen J,

[82] et al

[83] 19.↵
Seeley WW,
Menon V,
Schatzberg AF,
et al
. Dissociable intrinsic connectivity networks for salience processing and executive control. J Neurosci 2007;27:2349–56
Abstract/FREE Full Text

[84] Seeley WW,

[85] Menon V,

[86] Schatzberg AF,

[87] et al

[88] 20.↵
Bluhm RL,
Osuch EA,
Lanius RA,
et al
. Default mode network connectivity: effects of age, sex, and analytic approach. Neuroreport 2008;19:887–91
CrossRef PubMed Web of Science

[89] Bluhm RL,

[90] Osuch EA,

[91] Lanius RA,

[92] et al

[93] 21.↵
Long XY,
Zuo XN,
Kiviniemi V,
et al
. Default mode network as revealed with multiple methods for resting-state functional MRI analysis. J Neurosci Methods 2008;171:349–55
CrossRef PubMed Web of Science

[94] Long XY,

[95] Zuo XN,

[96] Kiviniemi V,

[97] et al

[98] 22.↵
Ma L,
Wang B,
Chen X,
et al
. Detecting functional connectivity in the resting brain: a comparison between ICA and CCA. Magn Reson Imaging 2008;25:47–56

[99] Ma L,

[100] Wang B,

[101] Chen X,

[102] et al

[103] 23.↵
Uddin LQ,
Kelly AM,
Biswal BB,
et al
. Functional connectivity of default mode network components: correlation, anticorrelation, and causality. Hum Brain Mapp 2009;30:625–37
CrossRef PubMed Web of Science

[104] Uddin LQ,

[105] Kelly AM,

[106] Biswal BB,

[107] et al

[108] 24.↵
Van Dijk KR,
Hedden T,
Venkataraman A,
et al
. Intrinsic functional connectivity as a tool for human connectomics: theory, properties, and optimization. J Neurophysiol 2010;103:297–321. Epub 2009 Nov 4
Abstract/FREE Full Text

[109] Van Dijk KR,

[110] Hedden T,

[111] Venkataraman A,

[112] et al

[113] 25.↵
Calhoun VD,
Kiehl KA,
Pearlson G.D.
. Modulation of temporally coherent brain networks estimated using ICA at rest and during cognitive tasks. Hum Brain Mapp 2008;29:828–38
CrossRef PubMed Web of Science

[114] Calhoun VD,

[115] Kiehl KA,

[116] Pearlson G.D.

[117] 26.↵
Calhoun VD,
Adali T,
Pearlson GD,
et al
. A method for making group inferences from functional MRI data using independent component analysis. Hum Brain Mapp 2001;14:140–51
CrossRef PubMed Web of Science

[118] Calhoun VD,

[119] Adali T,

[120] Pearlson GD,

[121] et al

[122] 27.↵
Rissanen J
. Modeling by the shortest data description. Automatica 1978;14:465–71
CrossRef Web of Science

[123] Rissanen J

[124] 28.↵
Rosazza C.,
Minati L
. Resting state brain networks: literature review and clinical applications. Neurol Sci 2011 Jun 11. [Epub ahead of print]

[125] Rosazza C.,

[126] Minati L

[127] 29.↵
Tzourio-Mazoyer N,
Landeau B,
Papathanassiou D,
et al
. Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. Neuroimage 2002;15:273–89
CrossRef PubMed Web of Science

[128] Tzourio-Mazoyer N,

[129] Landeau B,

[130] Papathanassiou D,

[131] et al

[132] 30.↵
Weissenbacher A,
Kasess C,
Gerstl F,
et al
. Correlations and anticorrelations in resting-state functional connectivity MRI: a quantitative comparison of preprocessing strategies. Neuroimage 2009;47:1408–16
CrossRef PubMed Web of Science

[133] Weissenbacher A,

[134] Kasess C,

[135] Gerstl F,

[136] et al

[137] 31.↵
Cohen J
. Statistical Power Analysis for the Behavioral Sciences. 2nd ed., Hillsdale, New Jersey: Lawrence Erlbaum Associates; 1988

[138] Cohen J

[139] 32.↵
Bullmore E,
Sporns O
. Complex brain networks: graph theoretical analysis of structural and functional systems. Nat Rev Neurosci 2009;10:186–98. Epub 2009 Feb 4
CrossRef PubMed Web of Science

[140] Bullmore E,

[141] Sporns O

[142] 33.↵
Soldati N,
Robinson S,
Bruzzone L,
et al
. Automatic identification of human brain resting-state networks: reliability of classification over number of independent components identified. In: Proceedings of the 15th Annual Meeting of the Organization for Human Brain Mapping, San Francisco, California. June 18–23, 2009

[143] Soldati N,

[144] Robinson S,

[145] Bruzzone L,

[146] et al

[147] 34.↵
Abou-Elseoud A,
Starck T,
Remes J,
et al
. The effect of model order selection in group PICA. Hum Brain Mapp 2010;31:1207–16
PubMed Web of Science

[148] Abou-Elseoud A,

[149] Starck T,

[150] Remes J,

[151] et al

[152] 35.↵
Fox MD,
Snyder AZ,
Vincent JL,
et al
. The human brain is intrinsically organized into dynamic, anticorrelated functional networks. Proc Natl Acad Sci U S A 2005;102:9673–78
Abstract/FREE Full Text

[153] Fox MD,

[154] Snyder AZ,

[155] Vincent JL,

[156] et al

[157] 36.↵
De Luca M,
Beckmann CF,
De Stefano N,
et al
. fMRI resting-state networks define distinct modes of long-distance interactions in the human brain. Neuroimage 2006;29:1359–67
CrossRef PubMed Web of Science

[158] De Luca M,

[159] Beckmann CF,

[160] De Stefano N,

[161] et al

[162] 37.↵
Zhang D,
Johnston JM,
Fox MD,
et al
. Preoperative sensorimotor mapping in brain tumor patients using spontaneous fluctuations in neuronal activity imaged with functional magnetic resonance imaging: initial experience. Neurosurgery 2009;65:226–36
PubMed Web of Science

[163] Zhang D,

[164] Johnston JM,

[165] Fox MD,

[166] et al

Main menu

User menu

Search

American Journal of Neuroradiology

Functional Connectivity during Resting-State Functional MR Imaging: Study of the Correspondence between Independent Component Analysis and Region-of-Interest−Based Methods

References

In this issue

Citation Manager Formats

Related Articles

Cited By...

More in this TOC Section

Similar Articles

News and Updates

Resources

Opportunities

American Society of Neuroradiology

Main menu

User menu

Search

Functional Connectivity during Resting-State Functional MR Imaging: Study of the Correspondence between Independent Component Analysis and Region-of-Interest−Based Methods

References

In this issue

Citation Manager Formats

Jump to section

Related Articles

Cited By...

More in this TOC Section

Similar Articles

News and Updates

Resources

Opportunities

American Society of Neuroradiology